Metadata-Version: 2.1
Name: pyteomics-utils
Version: 0.0.5
Summary: Simple but handy CLI tools for everyday data analysis tasks.
Author: Lev Levitsky
Author-email: pyteomics@googlegroups.com
License: License :: OSI Approved :: Apache Software License
Platform: UNKNOWN
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Education
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Chemistry
Classifier: Topic :: Scientific/Engineering :: Physics
Classifier: Topic :: Software Development :: Libraries
Provides-Extra: XML
License-File: LICENSE

# pyteomics-utils
Simple but handy CLI tools for everyday data analysis tasks.

The commands operate on stdin and write to stdout whenever possible.

## Supported commands (run each command with `-h` for help)

`pyteomics fasta decoy` -- generate a decoy database for one or more files.

`pyteomics fasta describe` -- check contents of a FASTA file.

`pyteomics fasta combine` -- combine multiple FASTA files, optionally adding decoys in the process.

`pyteomics pepxml info` -- list number of PSMs (with and without FDR filtering) in pepXML files.


