LICENSE
MANIFEST.in
README.md
setup.py
registry/adminer/container.yaml
registry/bids/aa/container.yaml
registry/bids/baracus/container.yaml
registry/bids/brainiak-srm/container.yaml
registry/bids/brainsautoworkup/container.yaml
registry/bids/broccoli/container.yaml
registry/bids/freesurfer/container.yaml
registry/bids/hcppipelines/container.yaml
registry/bids/matlab-compiler-runtime/container.yaml
registry/bids/mrtrix3_connectome/container.yaml
registry/bids/niak/container.yaml
registry/bids/pymvpa/container.yaml
registry/bids/rshrf/container.yaml
registry/bids/spm/container.yaml
registry/bids/tracula/container.yaml
registry/bids/validator/container.yaml
registry/biocontainers/abyss/container.yaml
registry/biocontainers/bamtools/container.yaml
registry/biocontainers/bcftools/container.yaml
registry/biocontainers/bedtools/container.yaml
registry/biocontainers/bowtie2/container.yaml
registry/biocontainers/bwa/container.yaml
registry/biocontainers/emboss/container.yaml
registry/biocontainers/fastqc/container.yaml
registry/biocontainers/picard/container.yaml
registry/biocontainers/picard-tools/container.yaml
registry/biocontainers/plink1.9/container.yaml
registry/biocontainers/samtools/container.yaml
registry/biocontainers/tabix/container.yaml
registry/biocontainers/talon/container.yaml
registry/biocontainers/tpp/container.yaml
registry/biocontainers/vcftools/container.yaml
registry/consul/container.yaml
registry/couchdb/container.yaml
registry/elasticsearch/container.yaml
registry/ghcr.io/autamus/abi-dumper/container.yaml
registry/ghcr.io/autamus/abyss/container.yaml
registry/ghcr.io/autamus/accumulo/container.yaml
registry/ghcr.io/autamus/addrwatch/container.yaml
registry/ghcr.io/autamus/adios/container.yaml
registry/ghcr.io/autamus/adios2/container.yaml
registry/ghcr.io/autamus/admixtools/container.yaml
registry/ghcr.io/autamus/advancecomp/container.yaml
registry/ghcr.io/autamus/alan/container.yaml
registry/ghcr.io/autamus/alps/container.yaml
registry/ghcr.io/autamus/amrex/container.yaml
registry/ghcr.io/autamus/angsd/container.yaml
registry/ghcr.io/autamus/arborx/container.yaml
registry/ghcr.io/autamus/argobots/container.yaml
registry/ghcr.io/autamus/aria2/container.yaml
registry/ghcr.io/autamus/ascent/container.yaml
registry/ghcr.io/autamus/astral/container.yaml
registry/ghcr.io/autamus/bart/container.yaml
registry/ghcr.io/autamus/bbmap/container.yaml
registry/ghcr.io/autamus/bcftools/container.yaml
registry/ghcr.io/autamus/beast2/container.yaml
registry/ghcr.io/autamus/bedops/container.yaml
registry/ghcr.io/autamus/bedtools2/container.yaml
registry/ghcr.io/autamus/bismark/container.yaml
registry/ghcr.io/autamus/bolt/container.yaml
registry/ghcr.io/autamus/boost/container.yaml
registry/ghcr.io/autamus/bowtie2/container.yaml
registry/ghcr.io/autamus/bracken/container.yaml
registry/ghcr.io/autamus/bwa/container.yaml
registry/ghcr.io/autamus/cabana/container.yaml
registry/ghcr.io/autamus/caliper/container.yaml
registry/ghcr.io/autamus/cantera/container.yaml
registry/ghcr.io/autamus/cctools/container.yaml
registry/ghcr.io/autamus/cdo/container.yaml
registry/ghcr.io/autamus/cfitsio/container.yaml
registry/ghcr.io/autamus/circos/container.yaml
registry/ghcr.io/autamus/clhep/container.yaml
registry/ghcr.io/autamus/clingo/container.yaml
registry/ghcr.io/autamus/cloc/container.yaml
registry/ghcr.io/autamus/conduit/container.yaml
registry/ghcr.io/autamus/corset/container.yaml
registry/ghcr.io/autamus/cowsay/container.yaml
registry/ghcr.io/autamus/cufflinks/container.yaml
registry/ghcr.io/autamus/curl/container.yaml
registry/ghcr.io/autamus/dakota/container.yaml
registry/ghcr.io/autamus/datatransferkit/container.yaml
registry/ghcr.io/autamus/diamond/container.yaml
registry/ghcr.io/autamus/dyninst/container.yaml
registry/ghcr.io/autamus/eagle/container.yaml
registry/ghcr.io/autamus/ed/container.yaml
registry/ghcr.io/autamus/emacs/container.yaml
registry/ghcr.io/autamus/faodel/container.yaml
registry/ghcr.io/autamus/fastqc/container.yaml
registry/ghcr.io/autamus/ffmpeg/container.yaml
registry/ghcr.io/autamus/flit/container.yaml
registry/ghcr.io/autamus/fraggenescan/container.yaml
registry/ghcr.io/autamus/gasnet/container.yaml
registry/ghcr.io/autamus/gatk/container.yaml
registry/ghcr.io/autamus/gawk/container.yaml
registry/ghcr.io/autamus/gcc/container.yaml
registry/ghcr.io/autamus/gdal/container.yaml
registry/ghcr.io/autamus/geant4/container.yaml
registry/ghcr.io/autamus/geos/container.yaml
registry/ghcr.io/autamus/ginkgo/container.yaml
registry/ghcr.io/autamus/git/container.yaml
registry/ghcr.io/autamus/glpk/container.yaml
registry/ghcr.io/autamus/gmp/container.yaml
registry/ghcr.io/autamus/gnuplot/container.yaml
registry/ghcr.io/autamus/gotcha/container.yaml
registry/ghcr.io/autamus/graphviz/container.yaml
registry/ghcr.io/autamus/grass/container.yaml
registry/ghcr.io/autamus/gromacs/container.yaml
registry/ghcr.io/autamus/gsl/container.yaml
registry/ghcr.io/autamus/hdf5/container.yaml
registry/ghcr.io/autamus/heaptrack/container.yaml
registry/ghcr.io/autamus/hisat2/container.yaml
registry/ghcr.io/autamus/hmmer/container.yaml
registry/ghcr.io/autamus/hpctoolkit/container.yaml
registry/ghcr.io/autamus/hpx/container.yaml
registry/ghcr.io/autamus/htop/container.yaml
registry/ghcr.io/autamus/htslib/container.yaml
registry/ghcr.io/autamus/hypre/container.yaml
registry/ghcr.io/autamus/igraph/container.yaml
registry/ghcr.io/autamus/intel-mkl/container.yaml
registry/ghcr.io/autamus/ior/container.yaml
registry/ghcr.io/autamus/iq-tree/container.yaml
registry/ghcr.io/autamus/jags/container.yaml
registry/ghcr.io/autamus/jasper/container.yaml
registry/ghcr.io/autamus/julia/container.yaml
registry/ghcr.io/autamus/kallisto/container.yaml
registry/ghcr.io/autamus/kraken2/container.yaml
registry/ghcr.io/autamus/lammps/container.yaml
registry/ghcr.io/autamus/legion/container.yaml
registry/ghcr.io/autamus/libnrm/container.yaml
registry/ghcr.io/autamus/libpng/container.yaml
registry/ghcr.io/autamus/libquo/container.yaml
registry/ghcr.io/autamus/libtiff/container.yaml
registry/ghcr.io/autamus/libunwind/container.yaml
registry/ghcr.io/autamus/libxpm/container.yaml
registry/ghcr.io/autamus/lmod/container.yaml
registry/ghcr.io/autamus/loki/container.yaml
registry/ghcr.io/autamus/lp-solve/container.yaml
registry/ghcr.io/autamus/mafft/container.yaml
registry/ghcr.io/autamus/meme/container.yaml
registry/ghcr.io/autamus/mercurial/container.yaml
registry/ghcr.io/autamus/mercury/container.yaml
registry/ghcr.io/autamus/metall/container.yaml
registry/ghcr.io/autamus/migrate/container.yaml
registry/ghcr.io/autamus/mothur/container.yaml
registry/ghcr.io/autamus/mpc/container.yaml
registry/ghcr.io/autamus/mpfr/container.yaml
registry/ghcr.io/autamus/mummer/container.yaml
registry/ghcr.io/autamus/muscle/container.yaml
registry/ghcr.io/autamus/nco/container.yaml
registry/ghcr.io/autamus/ninja/container.yaml
registry/ghcr.io/autamus/node-js/container.yaml
registry/ghcr.io/autamus/octave/container.yaml
registry/ghcr.io/autamus/omega-h/container.yaml
registry/ghcr.io/autamus/openbabel/container.yaml
registry/ghcr.io/autamus/opencv/container.yaml
registry/ghcr.io/autamus/openjdk/container.yaml
registry/ghcr.io/autamus/openmpi/container.yaml
registry/ghcr.io/autamus/pandaseq/container.yaml
registry/ghcr.io/autamus/papi/container.yaml
registry/ghcr.io/autamus/papyrus/container.yaml
registry/ghcr.io/autamus/parallel-netcdf/container.yaml
registry/ghcr.io/autamus/pdt/container.yaml
registry/ghcr.io/autamus/perl/container.yaml
registry/ghcr.io/autamus/petsc/container.yaml
registry/ghcr.io/autamus/phist/container.yaml
registry/ghcr.io/autamus/picard/container.yaml
registry/ghcr.io/autamus/plasma/container.yaml
registry/ghcr.io/autamus/plink/container.yaml
registry/ghcr.io/autamus/poppler/container.yaml
registry/ghcr.io/autamus/povray/container.yaml
registry/ghcr.io/autamus/precice/container.yaml
registry/ghcr.io/autamus/prodigal/container.yaml
registry/ghcr.io/autamus/proj/container.yaml
registry/ghcr.io/autamus/protobuf/container.yaml
registry/ghcr.io/autamus/pumi/container.yaml
registry/ghcr.io/autamus/py-libensemble/container.yaml
registry/ghcr.io/autamus/py-petsc4py/container.yaml
registry/ghcr.io/autamus/python/container.yaml
registry/ghcr.io/autamus/qhull/container.yaml
registry/ghcr.io/autamus/r/container.yaml
registry/ghcr.io/autamus/r-seqlogo/container.yaml
registry/ghcr.io/autamus/raxml/container.yaml
registry/ghcr.io/autamus/rclone/container.yaml
registry/ghcr.io/autamus/rempi/container.yaml
registry/ghcr.io/autamus/rsync/container.yaml
registry/ghcr.io/autamus/ruby/container.yaml
registry/ghcr.io/autamus/rust/container.yaml
registry/ghcr.io/autamus/salmon/container.yaml
registry/ghcr.io/autamus/samtools/container.yaml
registry/ghcr.io/autamus/scons/container.yaml
registry/ghcr.io/autamus/scr/container.yaml
registry/ghcr.io/autamus/siesta/container.yaml
registry/ghcr.io/autamus/slate/container.yaml
registry/ghcr.io/autamus/slepc/container.yaml
registry/ghcr.io/autamus/snappy/container.yaml
registry/ghcr.io/autamus/spades/container.yaml
registry/ghcr.io/autamus/sparsehash/container.yaml
registry/ghcr.io/autamus/sqlite/container.yaml
registry/ghcr.io/autamus/stc/container.yaml
registry/ghcr.io/autamus/stringtie/container.yaml
registry/ghcr.io/autamus/superlu/container.yaml
registry/ghcr.io/autamus/sz/container.yaml
registry/ghcr.io/autamus/tasmanian/container.yaml
registry/ghcr.io/autamus/tau/container.yaml
registry/ghcr.io/autamus/tcsh/container.yaml
registry/ghcr.io/autamus/trilinos/container.yaml
registry/ghcr.io/autamus/turbine/container.yaml
registry/ghcr.io/autamus/udunits/container.yaml
registry/ghcr.io/autamus/umap/container.yaml
registry/ghcr.io/autamus/unifyfs/container.yaml
registry/ghcr.io/autamus/unixodbc/container.yaml
registry/ghcr.io/autamus/upcxx/container.yaml
registry/ghcr.io/autamus/valgrind/container.yaml
registry/ghcr.io/autamus/veloc/container.yaml
registry/ghcr.io/autamus/wget/container.yaml
registry/ghcr.io/autamus/xnnpack/container.yaml
registry/ghcr.io/autamus/xrootd/container.yaml
registry/ghcr.io/autamus/xz/container.yaml
registry/ghcr.io/autamus/zfp/container.yaml
registry/ghcr.io/autamus/zlib/container.yaml
registry/ghcr.io/singularityhub/github-ci/container.yaml
registry/golang/container.yaml
registry/gradle/container.yaml
registry/jupyter/datascience-notebook/container.yaml
registry/jupyter/minimal-notebook/container.yaml
registry/jupyter/pyspark-notebook/container.yaml
registry/jupyter/r-notebook/container.yaml
registry/jupyter/scipy-notebook/container.yaml
registry/jupyter/tensorflow-notebook/container.yaml
registry/kibana/container.yaml
registry/mariadb/container.yaml
registry/mongo/container.yaml
registry/mysql/container.yaml
registry/ncbi/blast/container.yaml
registry/nginx/container.yaml
registry/node/container.yaml
registry/nvcr.io/hpc/autodock/container.yaml
registry/nvcr.io/hpc/gromacs/container.yaml
registry/nvcr.io/hpc/lammps/container.yaml
registry/nvcr.io/hpc/namd/container.yaml
registry/nvcr.io/hpc/preflightcheck/container.yaml
registry/nvcr.io/hpc/quantum_espresso/container.yaml
registry/nvcr.io/nvidia-hpcvis/paraview/container.yaml
registry/nvcr.io/nvidia/caffe/container.yaml
registry/nvcr.io/nvidia/digits/container.yaml
registry/nvcr.io/nvidia/hpc-benchmarks/container.yaml
registry/nvcr.io/nvidia/pytorch/container.yaml
registry/nvcr.io/nvidia/rapidsai/rapidsai/container.yaml
registry/nvcr.io/nvidia/tensorflow/container.yaml
registry/openjdk/container.yaml
registry/php/container.yaml
registry/poldracklab/mriqc/container.yaml
registry/postgres/container.yaml
registry/python/container.yaml
registry/quay.io/biocontainers/bamtools/container.yaml
registry/quay.io/biocontainers/bbmap/container.yaml
registry/quay.io/biocontainers/bcftools/container.yaml
registry/quay.io/biocontainers/beast2/container.yaml
registry/quay.io/biocontainers/bedtools/container.yaml
registry/quay.io/biocontainers/blast/container.yaml
registry/quay.io/biocontainers/bowtie2/container.yaml
registry/quay.io/biocontainers/bracken/container.yaml
registry/quay.io/biocontainers/bwa/container.yaml
registry/quay.io/biocontainers/bwa-mem2/container.yaml
registry/quay.io/biocontainers/canu/container.yaml
registry/quay.io/biocontainers/clustalo/container.yaml
registry/quay.io/biocontainers/cutadapt/container.yaml
registry/quay.io/biocontainers/diamond/container.yaml
registry/quay.io/biocontainers/fastp/container.yaml
registry/quay.io/biocontainers/fastqc/container.yaml
registry/quay.io/biocontainers/gatk4/container.yaml
registry/quay.io/biocontainers/kraken2/container.yaml
registry/quay.io/biocontainers/maker/container.yaml
registry/quay.io/biocontainers/mrbayes/container.yaml
registry/quay.io/biocontainers/multiqc/container.yaml
registry/quay.io/biocontainers/mummer/container.yaml
registry/quay.io/biocontainers/salmon/container.yaml
registry/quay.io/biocontainers/sambamba/container.yaml
registry/quay.io/biocontainers/samtools/container.yaml
registry/quay.io/biocontainers/spades/container.yaml
registry/quay.io/biocontainers/star/container.yaml
registry/quay.io/biocontainers/trimmomatic/container.yaml
registry/quay.io/biocontainers/trinity/container.yaml
registry/quay.io/biocontainers/vcftools/container.yaml
registry/quay.io/biocontainers/velvet/container.yaml
registry/quay.io/vgteam/vg/container.yaml
registry/r-base/container.yaml
registry/rabbitmq/container.yaml
registry/redis/container.yaml
registry/rocker/ml/container.yaml
registry/rocker/ml-verse/container.yaml
registry/rocker/rstudio/container.yaml
registry/rocker/shiny/container.yaml
registry/rocker/tidyverse/container.yaml
registry/ruby/container.yaml
registry/singularityhub/singularity-deploy/container.yaml
registry/solr/container.yaml
registry/spack/ubuntu-bionic/container.yaml
registry/tensorflow/tensorflow/container.yaml
registry/tomcat/container.yaml
registry/uvarc/qiime2/container.yaml
registry/vanessa/salad/container.yaml
registry/vault/container.yaml
shpc/__init__.py
shpc/defaults.py
shpc/logger.py
shpc/settings.yml
shpc/version.py
shpc/client/__init__.py
shpc/client/add.py
shpc/client/check.py
shpc/client/config.py
shpc/client/docgen.py
shpc/client/get.py
shpc/client/inspect.py
shpc/client/install.py
shpc/client/listing.py
shpc/client/namespace.py
shpc/client/pull.py
shpc/client/shell.py
shpc/client/show.py
shpc/client/test.py
shpc/client/uninstall.py
shpc/main/__init__.py
shpc/main/client.py
shpc/main/schemas.py
shpc/main/settings.py
shpc/main/templates.py
shpc/main/container/__init__.py
shpc/main/container/base.py
shpc/main/container/docker.py
shpc/main/container/podman.py
shpc/main/container/singularity.py
shpc/main/modules/__init__.py
shpc/main/modules/lmod.py
shpc/main/modules/tcl.py
shpc/main/modules/templates/__init__.py
shpc/main/modules/templates/docker.lua
shpc/main/modules/templates/docker.tcl
shpc/main/modules/templates/docs.md
shpc/main/modules/templates/singularity.lua
shpc/main/modules/templates/singularity.tcl
shpc/main/modules/templates/test.sh
shpc/tests/__init__.py
shpc/tests/helpers.sh
shpc/tests/test-registry-module.sh
shpc/tests/test_client.py
shpc/tests/test_client.sh
shpc/tests/test_container.py
shpc/tests/test_container_config.py
shpc/tests/test_settings.py
shpc/tests/test_utils.py
shpc/tests/testdata/hashtest.txt
shpc/tests/testdata/python-container.yaml
shpc/tests/testdata/quay-container.yaml
shpc/utils/__init__.py
shpc/utils/fileio.py
shpc/utils/terminal.py
singularity_hpc.egg-info/PKG-INFO
singularity_hpc.egg-info/SOURCES.txt
singularity_hpc.egg-info/dependency_links.txt
singularity_hpc.egg-info/entry_points.txt
singularity_hpc.egg-info/not-zip-safe
singularity_hpc.egg-info/requires.txt
singularity_hpc.egg-info/top_level.txt