MANIFEST.in
setup.py
assnake_core_preprocessing/__init__.py
assnake_core_preprocessing/snake_module_setup.py
assnake_core_preprocessing/utils.py
assnake_core_preprocessing.egg-info/PKG-INFO
assnake_core_preprocessing.egg-info/SOURCES.txt
assnake_core_preprocessing.egg-info/dependency_links.txt
assnake_core_preprocessing.egg-info/entry_points.txt
assnake_core_preprocessing.egg-info/requires.txt
assnake_core_preprocessing.egg-info/top_level.txt
assnake_core_preprocessing/__pycache__/__init__.cpython-36.pyc
assnake_core_preprocessing/__pycache__/snake_module_setup.cpython-36.pyc
assnake_core_preprocessing/count/__init__.py
assnake_core_preprocessing/count/count.result.json
assnake_core_preprocessing/count/result.py
assnake_core_preprocessing/count/wc_config.yaml
assnake_core_preprocessing/count/workflow.smk
assnake_core_preprocessing/count/__pycache__/__init__.cpython-36.pyc
assnake_core_preprocessing/count/__pycache__/cmd_count.cpython-36.pyc
assnake_core_preprocessing/count/__pycache__/result.cpython-36.pyc
assnake_core_preprocessing/count/scripts/count_bp.sh
assnake_core_preprocessing/fastq_dump/download.py
assnake_core_preprocessing/fastq_dump/env.yaml
assnake_core_preprocessing/fastqc/__init__.py
assnake_core_preprocessing/fastqc/env_v0.11.8.yaml
assnake_core_preprocessing/fastqc/fastqc.json
assnake_core_preprocessing/fastqc/result_fastqc.py
assnake_core_preprocessing/fastqc/wc_config.yaml
assnake_core_preprocessing/fastqc/workflow.smk
assnake_core_preprocessing/fastqc/wrapper.py
assnake_core_preprocessing/fastqc/__pycache__/__init__.cpython-36.pyc
assnake_core_preprocessing/fastqc/__pycache__/cmd_fastqc.cpython-36.pyc
assnake_core_preprocessing/fastqc/__pycache__/result_fastqc.cpython-36.pyc
assnake_core_preprocessing/minlen/minlen_bbmap.py
assnake_core_preprocessing/multiqc/__init__.py
assnake_core_preprocessing/multiqc/cmd_multiqc.py
assnake_core_preprocessing/multiqc/multiqc.py
assnake_core_preprocessing/multiqc/multiqc.yaml
assnake_core_preprocessing/multiqc/result.py
assnake_core_preprocessing/multiqc/wc_config.yaml
assnake_core_preprocessing/multiqc/workflow.smk
assnake_core_preprocessing/multiqc/__pycache__/__init__.cpython-36.pyc
assnake_core_preprocessing/multiqc/__pycache__/cmd_multiqc.cpython-36.pyc
assnake_core_preprocessing/multiqc/__pycache__/result.cpython-36.pyc
assnake_core_preprocessing/preprocessing/gz_operations.py
assnake_core_preprocessing/remove_human_bbmap/__init__.py
assnake_core_preprocessing/remove_human_bbmap/bbmap_env.yaml
assnake_core_preprocessing/remove_human_bbmap/init_remove_human_bbmap.py
assnake_core_preprocessing/remove_human_bbmap/result.py
assnake_core_preprocessing/remove_human_bbmap/wc_config.yaml
assnake_core_preprocessing/remove_human_bbmap/workflow.smk
assnake_core_preprocessing/remove_human_bbmap/__pycache__/__init__.cpython-36.pyc
assnake_core_preprocessing/remove_human_bbmap/__pycache__/cmd_remove_human_bbmap.cpython-36.pyc
assnake_core_preprocessing/remove_human_bbmap/__pycache__/init_remove_human_bbmap.cpython-36.pyc
assnake_core_preprocessing/remove_human_bbmap/__pycache__/result.cpython-36.pyc
assnake_core_preprocessing/trim_galore/env_0.6.2.yaml
assnake_core_preprocessing/trim_galore/trim_galore.py
assnake_core_preprocessing/trimmomatic/__init__.py
assnake_core_preprocessing/trimmomatic/def.json
assnake_core_preprocessing/trimmomatic/env_0.38.yaml
assnake_core_preprocessing/trimmomatic/result.py
assnake_core_preprocessing/trimmomatic/trimmomatic.json
assnake_core_preprocessing/trimmomatic/wc_config.yaml
assnake_core_preprocessing/trimmomatic/workflow.smk
assnake_core_preprocessing/trimmomatic/wrapper.py
assnake_core_preprocessing/trimmomatic/__pycache__/__init__.cpython-36.pyc
assnake_core_preprocessing/trimmomatic/__pycache__/cmd_trimmomatic.cpython-36.pyc
assnake_core_preprocessing/trimmomatic/__pycache__/result.cpython-36.pyc
assnake_core_preprocessing/trimmomatic/adapters/NexteraPE-PE.fa
assnake_core_preprocessing/trimmomatic/adapters/TruSeq2-PE.fa
assnake_core_preprocessing/trimmomatic/adapters/TruSeq2-SE.fa
assnake_core_preprocessing/trimmomatic/adapters/TruSeq3-PE-2.fa
assnake_core_preprocessing/trimmomatic/adapters/TruSeq3-PE.fa
assnake_core_preprocessing/trimmomatic/adapters/TruSeq3-SE.fa
assnake_core_preprocessing/trimmomatic/adapters/helic_adapters_all.fa